Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria

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dc.contributor.advisorGammon, David Wen_ZA
dc.contributor.authorNgumbu Muhunga, Denisen_ZA
dc.date.accessioned2016-06-10T07:39:36Z
dc.date.available2016-06-10T07:39:36Z
dc.date.issued2015en_ZA
dc.description.abstractMycothiol is found only in Actinobacteria including M. tuberculosis, and appears to play an important role in the bacterium's defence against xenobiotics and oxidative stress. The biosynthetic pathway to this pseudo-disaccharide has been elucidated and a range of mycothiol-dependent enzymes have been identified. Compounds A.3, which have naphthoquinonyl units tethered to the pseudodisaccharide core, have significant inhibitory activity against mshB and mca in the biosynthetic pathway. These findings, together with the independent discovery of anti-TB activity associated with carbazole quinones such as B, led to the design and synthesis of a new class of hybrid molecules C which have the carbazole quinone motif tethered to the pseudodisaccharide core. The synthesis of these hybrid molecules involved initial preparation of phenylthio- or methyl-glucosides having either an amine or a suitably-functionalized carbon side-chain at C-2. Carbazole-quinones 37 and 39, bearing carboxyalkyl substituents, were prepared using Knölker methodology, and coupled to phenylthio-2-amino-glucoside 36 to generate, after deprotection, the desired hybrid structures 38 and 40. The preferred strategy for preparing 2-C-alkylglucosides was via initial preparation of a 2-C-carboxymethyl glucoside 44 from D-glucal, and conversion of this to the Weinreb amide 45 for intended coupling with Grignard and other organometallic reagents to form ketones. The Weinreb amide was shown to only react with simple metal-aryl reagents, and but not with those derived from the required tri-substituted benzenes. In the exploration of alternative strategies, the side-chain in 44 was successfully converted to either a 2-C-vinyl or the corresponding (E)-vinyl bromide side-chain, but both proved unreactive in attempts at Pd-mediated cross-coupling reactions to further develop the side-chain. Compound 44 could also be readily converted to either a 2-C-haloethyl or 2-C-aminoethyl derivative: the former resisted conversion to Wittig reagents, while the latter was unreactive in attempted Buchwald-Hartwig amination but successfully underwent reductive amination with a substituted benzaldehyde to give an advanced Abstract precursor of the target hybrid molecules. Compounds 38 and 40 together with similar analogues prepared in parallel with this study showed significant inhibitory activity against mshB, allowing for a preliminary SAR conclusion that the inhibitory activity is dependent on the covalent association of the glycoside and the carbazole-quinone, the point of attachment of the sugar unit to the carbazole quinone, and the length of the tether.en_ZA
dc.identifier.apacitationNgumbu Muhunga, D. (2015). <i>Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria</i>. (Thesis). University of Cape Town ,Faculty of Science ,Department of Chemistry. Retrieved from http://hdl.handle.net/11427/20002en_ZA
dc.identifier.chicagocitationNgumbu Muhunga, Denis. <i>"Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria."</i> Thesis., University of Cape Town ,Faculty of Science ,Department of Chemistry, 2015. http://hdl.handle.net/11427/20002en_ZA
dc.identifier.citationNgumbu Muhunga, D. 2015. Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria. University of Cape Town.en_ZA
dc.identifier.ris TY - Thesis / Dissertation AU - Ngumbu Muhunga, Denis AB - Mycothiol is found only in Actinobacteria including M. tuberculosis, and appears to play an important role in the bacterium's defence against xenobiotics and oxidative stress. The biosynthetic pathway to this pseudo-disaccharide has been elucidated and a range of mycothiol-dependent enzymes have been identified. Compounds A.3, which have naphthoquinonyl units tethered to the pseudodisaccharide core, have significant inhibitory activity against mshB and mca in the biosynthetic pathway. These findings, together with the independent discovery of anti-TB activity associated with carbazole quinones such as B, led to the design and synthesis of a new class of hybrid molecules C which have the carbazole quinone motif tethered to the pseudodisaccharide core. The synthesis of these hybrid molecules involved initial preparation of phenylthio- or methyl-glucosides having either an amine or a suitably-functionalized carbon side-chain at C-2. Carbazole-quinones 37 and 39, bearing carboxyalkyl substituents, were prepared using Knölker methodology, and coupled to phenylthio-2-amino-glucoside 36 to generate, after deprotection, the desired hybrid structures 38 and 40. The preferred strategy for preparing 2-C-alkylglucosides was via initial preparation of a 2-C-carboxymethyl glucoside 44 from D-glucal, and conversion of this to the Weinreb amide 45 for intended coupling with Grignard and other organometallic reagents to form ketones. The Weinreb amide was shown to only react with simple metal-aryl reagents, and but not with those derived from the required tri-substituted benzenes. In the exploration of alternative strategies, the side-chain in 44 was successfully converted to either a 2-C-vinyl or the corresponding (E)-vinyl bromide side-chain, but both proved unreactive in attempts at Pd-mediated cross-coupling reactions to further develop the side-chain. Compound 44 could also be readily converted to either a 2-C-haloethyl or 2-C-aminoethyl derivative: the former resisted conversion to Wittig reagents, while the latter was unreactive in attempted Buchwald-Hartwig amination but successfully underwent reductive amination with a substituted benzaldehyde to give an advanced Abstract precursor of the target hybrid molecules. Compounds 38 and 40 together with similar analogues prepared in parallel with this study showed significant inhibitory activity against mshB, allowing for a preliminary SAR conclusion that the inhibitory activity is dependent on the covalent association of the glycoside and the carbazole-quinone, the point of attachment of the sugar unit to the carbazole quinone, and the length of the tether. DA - 2015 DB - OpenUCT DP - University of Cape Town LK - https://open.uct.ac.za PB - University of Cape Town PY - 2015 T1 - Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria TI - Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria UR - http://hdl.handle.net/11427/20002 ER - en_ZA
dc.identifier.urihttp://hdl.handle.net/11427/20002
dc.identifier.vancouvercitationNgumbu Muhunga D. Synthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteria. [Thesis]. University of Cape Town ,Faculty of Science ,Department of Chemistry, 2015 [cited yyyy month dd]. Available from: http://hdl.handle.net/11427/20002en_ZA
dc.language.isoengen_ZA
dc.publisher.departmentDepartment of Chemistryen_ZA
dc.publisher.facultyFaculty of Scienceen_ZA
dc.publisher.institutionUniversity of Cape Town
dc.subject.otherChemistryen_ZA
dc.titleSynthesis of side-chain-modified mycothiol analogues incorporating carbazole quinones, and evaluation as inhibitors of enzymes in the Mycobacteriaen_ZA
dc.typeDoctoral Thesis
dc.type.qualificationlevelDoctoral
dc.type.qualificationnamePhDen_ZA
uct.type.filetypeText
uct.type.filetypeImage
uct.type.publicationResearchen_ZA
uct.type.resourceThesisen_ZA
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