Graphics processing unit accelerated coarse-grained protein-protein docking
dc.contributor.advisor | Kuttel, Michelle Mary | en_ZA |
dc.contributor.advisor | Gain, JE | en_ZA |
dc.contributor.advisor | Best, RB | en_ZA |
dc.contributor.author | Tunbridge, Ian William | en_ZA |
dc.date.accessioned | 2015-01-06T19:04:46Z | |
dc.date.available | 2015-01-06T19:04:46Z | |
dc.date.issued | 2011 | en_ZA |
dc.description | Includes abstract. | en_ZA |
dc.description | Includes bibliographical references (leaves [187]-202). | en_ZA |
dc.description.abstract | In this work, we describe a Graphics processing unit (GPU) implementation of the Kim-Hummer coarse-grained model for protein docking simulations, using a Replica Exchange Monte-Carlo (REMC) method. Our highly parallel implementation vastly increases the size- and time scales accessible to molecular simulation. We describe in detail the complex process of migrating the algorithm to a GPU as well as the effect of various GPU approaches and optimisations on algorithm speed-up. | en_ZA |
dc.identifier.apacitation | Tunbridge, I. W. (2011). <i>Graphics processing unit accelerated coarse-grained protein-protein docking</i>. (Thesis). University of Cape Town ,Faculty of Science ,Department of Computer Science. Retrieved from http://hdl.handle.net/11427/11670 | en_ZA |
dc.identifier.chicagocitation | Tunbridge, Ian William. <i>"Graphics processing unit accelerated coarse-grained protein-protein docking."</i> Thesis., University of Cape Town ,Faculty of Science ,Department of Computer Science, 2011. http://hdl.handle.net/11427/11670 | en_ZA |
dc.identifier.citation | Tunbridge, I. 2011. Graphics processing unit accelerated coarse-grained protein-protein docking. University of Cape Town. | en_ZA |
dc.identifier.ris | TY - Thesis / Dissertation AU - Tunbridge, Ian William AB - In this work, we describe a Graphics processing unit (GPU) implementation of the Kim-Hummer coarse-grained model for protein docking simulations, using a Replica Exchange Monte-Carlo (REMC) method. Our highly parallel implementation vastly increases the size- and time scales accessible to molecular simulation. We describe in detail the complex process of migrating the algorithm to a GPU as well as the effect of various GPU approaches and optimisations on algorithm speed-up. DA - 2011 DB - OpenUCT DP - University of Cape Town LK - https://open.uct.ac.za PB - University of Cape Town PY - 2011 T1 - Graphics processing unit accelerated coarse-grained protein-protein docking TI - Graphics processing unit accelerated coarse-grained protein-protein docking UR - http://hdl.handle.net/11427/11670 ER - | en_ZA |
dc.identifier.uri | http://hdl.handle.net/11427/11670 | |
dc.identifier.vancouvercitation | Tunbridge IW. Graphics processing unit accelerated coarse-grained protein-protein docking. [Thesis]. University of Cape Town ,Faculty of Science ,Department of Computer Science, 2011 [cited yyyy month dd]. Available from: http://hdl.handle.net/11427/11670 | en_ZA |
dc.language.iso | eng | en_ZA |
dc.publisher.department | Department of Computer Science | en_ZA |
dc.publisher.faculty | Faculty of Science | en_ZA |
dc.publisher.institution | University of Cape Town | |
dc.title | Graphics processing unit accelerated coarse-grained protein-protein docking | en_ZA |
dc.type | Doctoral Thesis | |
dc.type.qualificationlevel | Doctoral | |
dc.type.qualificationname | PhD | en_ZA |
uct.type.filetype | Text | |
uct.type.filetype | Image | |
uct.type.publication | Research | en_ZA |
uct.type.resource | Thesis | en_ZA |
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