Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa
| dc.contributor.advisor | Verboom, George Anthony | en_ZA |
| dc.contributor.advisor | Ellis, Allan G | en_ZA |
| dc.contributor.author | Musker, Seth | en_ZA |
| dc.date.accessioned | 2018-02-07T09:14:15Z | |
| dc.date.available | 2018-02-07T09:14:15Z | |
| dc.date.issued | 2017 | en_ZA |
| dc.description.abstract | What are the roles of alternative modes of speciation in the generation of biological diversity? This question is fundamental to the debate surrounding the origins of extraordinarily diverse regions and clades. Diversification in the Cape flora of South Africa has been intensively studied owing to its remarkable diversity, for which significant roles for both ecological and non-ecological speciation have been invoked as drivers. However, much of this research has focused on the mesic fynbos vegetation, with far less attention paid to its neighboring biodiversity hotspot, the arid Succulent Karoo (SK), which has hosted the spectacular radiation of the ecologically dominant ruschioid Aizoaceae, a succulent group which exhibits extreme morphological diversity and convergence. This thesis focused on ruschioid Aizoaceae in the Knersvlakte, a small region of the SK which holds a diverse and endemic-rich flora specially adapted to the ecologically unusual quartz fields - whose patchy distribution in the landscape suggests that diversification may have been facilitated by divergence of populations isolated on these 'environmental islands' in a similar fashion to serpentine systems such as those in California - and continues from previous work on the Knersvlakte-endemic ruschioid genus Argyroderma which supported an adaptive radiation in allopatry hypothesis. A population genomic approach was used to investigate the scale of seed dispersal (which is thought to be very limited due to the group's highly specialized ballistic dispersal mechanism) as well as correlates of population divergence in two ruschioid quartz-field specialists with very different growth forms (the shrubby Ruschia burtoniae versus the dwarf Conophytum calculus) and which co-occurred at four sites distributed throughout the Knersvlakte. This, in combination with ecological and experimental transplant data to test the adaptive underpinning of edaphically-driven community structure, ecological isolation and niche divergence in these and other quartz field species, made it possible to tease apart the roles of local adaptation and limited dispersal in driving gene flow and speciation in the system. Quartz fields were found to be a highly insular habitat with strong internal edaphic community structure, suggesting that they represent an environmental island system. In addition, intrinsic dispersal ability was very poor in the specialist shrub, which showed complete genetic isolation between the four populations separated by just 17-42 km. This species showed strong local adaptation between the populations as well as some evidence that this inhibited gene flow, though it is more likely that dispersal limitation allowed for fundamental niche divergence. In contrast, the dwarf showed surprisingly good dispersal ability and consequent weak genetic structure, which accounted for the lack of edaphic local adaptation between the populations. The study showed that, contrary to expectation, not all ruschioid Aizoaceae are poor dispersers, and also suggested that the likelihood of ecological speciation in response to edaphic heterogeneity is contingent on dispersal ability. Strongly limited dispersal may thus have contributed to the group's diversification either through non-adaptive radiation or edaphically driven adaptive radiation, but other factors are more likely to have driven diversification in sections of ruschioid Aizoaceae that possess mechanisms of long-distance dispersal. Future work might focus on inferring the scale of dispersal (e.g. based on morphological traits) and whether it predicts diversification rates. Finally, the lack of morphological variation in R. burtoniae belies its strong ecological and genetic divergence; in light of this, systematists are encouraged to investigate cryptic speciation in the group. | en_ZA |
| dc.identifier.apacitation | Musker, S. (2017). <i>Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa</i>. (Thesis). University of Cape Town ,Faculty of Science ,Department of Biological Sciences. Retrieved from http://hdl.handle.net/11427/27384 | en_ZA |
| dc.identifier.chicagocitation | Musker, Seth. <i>"Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa."</i> Thesis., University of Cape Town ,Faculty of Science ,Department of Biological Sciences, 2017. http://hdl.handle.net/11427/27384 | en_ZA |
| dc.identifier.citation | Musker, S. 2017. Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa. University of Cape Town. | en_ZA |
| dc.identifier.ris | TY - Thesis / Dissertation AU - Musker, Seth AB - What are the roles of alternative modes of speciation in the generation of biological diversity? This question is fundamental to the debate surrounding the origins of extraordinarily diverse regions and clades. Diversification in the Cape flora of South Africa has been intensively studied owing to its remarkable diversity, for which significant roles for both ecological and non-ecological speciation have been invoked as drivers. However, much of this research has focused on the mesic fynbos vegetation, with far less attention paid to its neighboring biodiversity hotspot, the arid Succulent Karoo (SK), which has hosted the spectacular radiation of the ecologically dominant ruschioid Aizoaceae, a succulent group which exhibits extreme morphological diversity and convergence. This thesis focused on ruschioid Aizoaceae in the Knersvlakte, a small region of the SK which holds a diverse and endemic-rich flora specially adapted to the ecologically unusual quartz fields - whose patchy distribution in the landscape suggests that diversification may have been facilitated by divergence of populations isolated on these 'environmental islands' in a similar fashion to serpentine systems such as those in California - and continues from previous work on the Knersvlakte-endemic ruschioid genus Argyroderma which supported an adaptive radiation in allopatry hypothesis. A population genomic approach was used to investigate the scale of seed dispersal (which is thought to be very limited due to the group's highly specialized ballistic dispersal mechanism) as well as correlates of population divergence in two ruschioid quartz-field specialists with very different growth forms (the shrubby Ruschia burtoniae versus the dwarf Conophytum calculus) and which co-occurred at four sites distributed throughout the Knersvlakte. This, in combination with ecological and experimental transplant data to test the adaptive underpinning of edaphically-driven community structure, ecological isolation and niche divergence in these and other quartz field species, made it possible to tease apart the roles of local adaptation and limited dispersal in driving gene flow and speciation in the system. Quartz fields were found to be a highly insular habitat with strong internal edaphic community structure, suggesting that they represent an environmental island system. In addition, intrinsic dispersal ability was very poor in the specialist shrub, which showed complete genetic isolation between the four populations separated by just 17-42 km. This species showed strong local adaptation between the populations as well as some evidence that this inhibited gene flow, though it is more likely that dispersal limitation allowed for fundamental niche divergence. In contrast, the dwarf showed surprisingly good dispersal ability and consequent weak genetic structure, which accounted for the lack of edaphic local adaptation between the populations. The study showed that, contrary to expectation, not all ruschioid Aizoaceae are poor dispersers, and also suggested that the likelihood of ecological speciation in response to edaphic heterogeneity is contingent on dispersal ability. Strongly limited dispersal may thus have contributed to the group's diversification either through non-adaptive radiation or edaphically driven adaptive radiation, but other factors are more likely to have driven diversification in sections of ruschioid Aizoaceae that possess mechanisms of long-distance dispersal. Future work might focus on inferring the scale of dispersal (e.g. based on morphological traits) and whether it predicts diversification rates. Finally, the lack of morphological variation in R. burtoniae belies its strong ecological and genetic divergence; in light of this, systematists are encouraged to investigate cryptic speciation in the group. DA - 2017 DB - OpenUCT DP - University of Cape Town LK - https://open.uct.ac.za PB - University of Cape Town PY - 2017 T1 - Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa TI - Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa UR - http://hdl.handle.net/11427/27384 ER - | en_ZA |
| dc.identifier.uri | http://hdl.handle.net/11427/27384 | |
| dc.identifier.vancouvercitation | Musker S. Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa. [Thesis]. University of Cape Town ,Faculty of Science ,Department of Biological Sciences, 2017 [cited yyyy month dd]. Available from: http://hdl.handle.net/11427/27384 | en_ZA |
| dc.language.iso | eng | en_ZA |
| dc.publisher.department | Department of Biological Sciences | en_ZA |
| dc.publisher.faculty | Faculty of Science | en_ZA |
| dc.publisher.institution | University of Cape Town | |
| dc.subject.other | Botany | en_ZA |
| dc.subject.other | Biological Diversity | en_ZA |
| dc.title | Dispersal, gene flow, niche divergence and local adaptation in the hyper-diverse ruschioid Aizoaceae: testing alternative modes of speciation in the Knersvlakte quartz field flora of the Succulent Karoo, South Africa | en_ZA |
| dc.type | Master Thesis | |
| dc.type.qualificationlevel | Masters | |
| dc.type.qualificationname | MSc | en_ZA |
| uct.type.filetype | Text | |
| uct.type.filetype | Image | |
| uct.type.publication | Research | en_ZA |
| uct.type.resource | Thesis | en_ZA |
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