A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening
| dc.contributor.author | Chambuso, Ramadhani | |
| dc.contributor.author | Robertson, Barbara | |
| dc.contributor.author | Ramesar, Raj | |
| dc.date.accessioned | 2022-10-18T14:59:44Z | |
| dc.date.available | 2022-10-18T14:59:44Z | |
| dc.date.issued | 2022-06-12 | |
| dc.date.updated | 2022-06-23T12:11:42Z | |
| dc.description.abstract | Identification of germline pathogenic variants (PV) predisposing to Lynch syndrome (LS) is an important step for effective use of cascade screening of extended at-risk lineages, leading to reduced morbidity and mortality due to colorectal cancer (CRC). As a general rule, however, next generation sequencing (NGS, either of gene panels or whole exomes) is relatively expensive and unaffordable for general clinical use. In resource-poor settings, performing NGS testing on an entire cohort of CRC patients, even if limited to those under 50 or 60 years of age, still places an enormous burden on limited resources. Although family history can be a good indicator for LS testing, identifying at-risk family members and offering cascade screening may not benefit many patients/probands without an obvious family history. This article presents a novel program called Modified Ascertainment and follow-up Program (MAP) with a scoring model for LS ascertainment and molecular screening by NGS with diagnosis confirmation of PV and cascade screening. The goal is to improve LS ascertainment in light of the growing burden of early-onset CRC, particularly in low- and middle-income countries. Through MAP, judiciously applied molecular genetics will improve identification of PV predisposing to LS and cascade screening. | en_US |
| dc.identifier | doi: 10.3390/cancers14122901 | |
| dc.identifier.apacitation | Chambuso, R., Robertson, B., & Ramesar, R. (2022). A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening. <i>Cancers</i>, 14(12), 2901. http://hdl.handle.net/11427/36843 | en_ZA |
| dc.identifier.chicagocitation | Chambuso, Ramadhani, Barbara Robertson, and Raj Ramesar "A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening." <i>Cancers</i> 14, 12. (2022): 2901. http://hdl.handle.net/11427/36843 | en_ZA |
| dc.identifier.citation | Chambuso, R., Robertson, B. & Ramesar, R. 2022. A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening. <i>Cancers.</i> 14(12):2901. http://hdl.handle.net/11427/36843 | en_ZA |
| dc.identifier.ris | TY - Journal Article AU - Chambuso, Ramadhani AU - Robertson, Barbara AU - Ramesar, Raj AB - Identification of germline pathogenic variants (PV) predisposing to Lynch syndrome (LS) is an important step for effective use of cascade screening of extended at-risk lineages, leading to reduced morbidity and mortality due to colorectal cancer (CRC). As a general rule, however, next generation sequencing (NGS, either of gene panels or whole exomes) is relatively expensive and unaffordable for general clinical use. In resource-poor settings, performing NGS testing on an entire cohort of CRC patients, even if limited to those under 50 or 60 years of age, still places an enormous burden on limited resources. Although family history can be a good indicator for LS testing, identifying at-risk family members and offering cascade screening may not benefit many patients/probands without an obvious family history. This article presents a novel program called Modified Ascertainment and follow-up Program (MAP) with a scoring model for LS ascertainment and molecular screening by NGS with diagnosis confirmation of PV and cascade screening. The goal is to improve LS ascertainment in light of the growing burden of early-onset CRC, particularly in low- and middle-income countries. Through MAP, judiciously applied molecular genetics will improve identification of PV predisposing to LS and cascade screening. DA - 2022-06-12 DB - OpenUCT DP - University of Cape Town IS - 12 J1 - Cancers LK - https://open.uct.ac.za PY - 2022 T1 - A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening TI - A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening UR - http://hdl.handle.net/11427/36843 ER - | en_ZA |
| dc.identifier.uri | http://hdl.handle.net/11427/36843 | |
| dc.identifier.vancouvercitation | Chambuso R, Robertson B, Ramesar R. A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening. Cancers. 2022;14(12):2901. http://hdl.handle.net/11427/36843. | en_ZA |
| dc.language.iso | en | en_US |
| dc.publisher.department | Department of Pathology | en_US |
| dc.publisher.faculty | Faculty of Health Sciences | en_US |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | en_US |
| dc.source | Cancers | en_US |
| dc.source.journalissue | 12 | en_US |
| dc.source.journalvolume | 14 | en_US |
| dc.source.pagination | 2901 | en_US |
| dc.source.uri | https://www.mdpi.com/journal/cancers | |
| dc.title | A Scoring Model and Protocol to Adapt Universal Screening for Lynch Syndrome to Identify Germline Pathogenic Variants by Next Generation Sequencing from Colorectal Cancer Patients and Cascade Screening | en_US |
| dc.type | Journal Article | en_US |