Browsing by Subject "symmetric EM maps"

Now showing 1 - 1 of 1
  • Thumbnail Image
    Item
    Restricted
    Symmetry-restrained flexible fitting for symmetric EM maps
    (Elsevier, 2011) Chan, Kwok-Yan; Gumbart, James; McGreevy, Ryan; Watermeyer, Jean M; Sewell, Trevor B; Schulten, Klaus
    Many large biological macromolecules have inherent structural symmetry, being composed of a few distinct subunits, repeated in a symmetric array. These complexes are often not amenable to traditional high-resolution structural determination methods, but can be imaged in functionally relevant states using cryo-electron microscopy (cryo-EM). A number of methods for fitting atomic-scale structures into cryo-EM maps have been developed, including the molecular dynamics flexible fitting (MDFF) method. However, quality and resolution of the cryo-EM map are the major determinants of a method's success. In order to incorporate knowledge of structural symmetry into the fitting procedure, we developed the symmetry-restrained MDFF method. The new method adds to the cryo-EM map-derived potential further restraints on the allowed conformations of a complex during fitting, thereby improving the quality of the resultant structure. The benefit of using symmetry-based restraints during fitting, particularly for medium to low-resolution data, is demonstrated for three different systems.