Browsing by Subject "Skin"

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    Open Access
    A quantitative characterization of tuberculin skin test indurations using hyperspectral imaging to enable automated latent tuberculosis screening
    (2025) Oladokun, Ajibola Samson; Malila, Bessie; Mutsvangwa, Tinashe
    An estimated two billion people globally are believed to harbour latent tuberculosis infection (LTBI), which is a precursor to active tuberculosis (TB). Immunocompromising conditions, such as human immunodeficiency virus (HIV) infection, diabetes, chronic renal failure, and chemotherapy, are associated with the risk of progression from LTBI to active TB. People with LTBI represent a major reservoir for new active TB cases. Thus, the detection and management of LTBI is key to the world health organisation (WHO) goal to reduce TB incidence globally by 90% by the year 2035. The tuberculin skin test (TST) is the most widely used test for LTBI in low- and middle-income countries (LMICs). It involves the injection of tuberculin into the forearm skin of a participant. An induration – a subdermal lump – forms at the injection site 48 – 72 hours after the test. Using the Mantoux reading method, diagnosis is obtained using a pen and a ruler to measure the induration diameter and comparing it with consensus thresholds. Mantoux readings are subject to inter- and intra-observer subjective variations in readings. The manual nature of this method precludes any repeat analysis or validation after the 72-hour expiry of an induration. Furthermore, the Mantoux method does not provide any significant insight on the pathophysiology of indurations which could improve current understanding of LTBI. Recent applications of hyperspectral imaging (HSI) in other dermatological applications provides evidence of its viability in addressing the shortcomings of the TST. Thus, the aim of this research was to develop and validate an HSI-based approach for quantitative characterisation of TST indurations that can aid the diagnosis of LTBI. This aim was achieved through three objectives. The first objective was to develop and validate an HSI protocol for reliable and reproducible acquisition of spectral signatures of TST injection sites. An enclosure was designed to implement and validate the developed protocol. The validation was done using a range of light source types and ten participants with a wide range of skin tones. The effect of light source type on skin spectral signature was investigated to reveal factors that impact spectral reproducibility. The validated imaging protocol was utilized in the second objective to reliably capture the hyperspectral images of 70 participants (38 from South Africa and 32 from Vietnam). The objective was to develop and validate an HSI-model that can generate precise diameter estimations of TST indurations that are comparable to traditional Mantoux readings. Principal component analysis was utilized to transform the hyperspectral images (or hypercubes) into principal components and generate induration segmentation masks. Precise induration diameter estimations, which were comparable to corresponding Mantoux readings, were generated from the masks. An intraclass correlation coefficient score of 0.80, a median difference in reading of 0.29 mm, and a Pearson's correlation of 0.664 (p<0.001), was achieved between the HSI-based diameter estimations and corresponding Mantoux readings. This metrics surpassed the performance of similar studies. This is evidence that HSI can mitigate the subjectivity of the Mantoux method by generating comparable but more precise diameter estimations of TST indurations. The induration hypercubes and segmentation masks were utilized in the third objective to develop and validate an HSI framework capable of identifying biomarkers that accurately and consistently characterise TST indurations. The framework enabled the generation of chromophore maps from induration hypercubes. Radiomics was applied on the chromophore maps to generate a set of features. The features were used, in conjunction with a support vector machine model, to rank the ability of the generated chromophore maps to predict LTBI. Ferritin, water, and oxyhaemoglobin maps were identified as the most predictive chromophore maps for LTBI. The predictive accuracies for TST diagnosis using these chromophores were 90.0% across all participants, and 96.0% and 96.7% for the South African and Vietnamese participants. This is evidence that HSI can noninvasively facilitate the generation of chromophore biomarkers to characters TST indurations – a first of its kind in literature. These findings present HSI as a potential modality for mitigating the subjectivity of the Mantoux method and identifying digital biomarkers that noninvasively offer insights into induration pathophysiology. The potential impact of this research is improved health outcome for at-risk TBgroups via enhanced LTBI screening accuracy and precision.
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    Open Access
    Expanding the clinical spectrum of hereditary fibrosing poikiloderma with tendon contractures, myopathy and pulmonary fibrosis due to FAM111B mutations
    (2015) Mercier, Sandra; Küry, Sébastien; Salort-Campana, Emmanuelle; Magot, Armelle; Agbim, Uchenna; Besnard, Thomas; Bodak, Nathalie; Bou-Hanna, Chantal; Bréhéret, Flora; Brunelle, Perrine; Caillon, Florence; Chabrol, Brigitte; Cormier-Daire, Valérie; David, Albert; Eymard, Bruno; Faivre, Laurence; Figarella-Branger, Dominique; Fleurence, Emmanuelle; Ganapathi, Mythily; Gherardi, Romain; Goldenberg, Alice; Hamel, Antoine; Igual, Jeanine; Irvine, Alan D; Israël-Biet, Dominique; Kannengiesser, Caroline; Laboisse, Christian; Le Caignec, Cédric; Mahé, Jean-Yves; Mallet, Stéphanie; MacGowan, Stuart; McAleer, Maeve A; McLean, Irwin; Méni, Cécile; Munnich, Arnold; Mussini, Jean-Marie; Nagy, Peter L; Odel, Jeffrey; O’Regan, Grainne M; Péréon, Yann; Perrier, Julie; Piard, Juliette; Puzenat, Eve; Sampson, Jacinda B; Smith, Frances; Soufir, Nadem; Tanji, Kurenai; Thauvin, Christel; Ulane, Christina; Watson, Rosemarie M; Khumalo, Nonhlanhla P; Mayosi, Bongani M; Barbarot, Sébastien; Bézieau, Stéphane
    BackgroundHereditary Fibrosing Poikiloderma (HFP) with tendon contractures, myopathy and pulmonary fibrosis (POIKTMP [MIM 615704]) is a very recently described entity of syndromic inherited poikiloderma. Previously by using whole exome sequencing in five families, we identified the causative gene, FAM111B (NM_198947.3), the function of which is still unknown. Our objective in this study was to better define the specific features of POIKTMP through a larger series of patients.MethodsClinical and molecular data of two families and eight independent sporadic cases, including six new cases, were collected.ResultsKey features consist of: (i) early-onset poikiloderma, hypotrichosis and hypohidrosis; (ii) multiple contractures, in particular triceps surae muscle contractures; (iii) diffuse progressive muscular weakness; (iv) pulmonary fibrosis in adulthood and (v) other features including exocrine pancreatic insufficiency, liver impairment and growth retardation. Muscle magnetic resonance imaging was informative and showed muscle atrophy and fatty infiltration. Histological examination of skeletal muscle revealed extensive fibroadipose tissue infiltration. Microscopy of the skin showed a scleroderma-like aspect with fibrosis and alterations of the elastic network. FAM111B gene analysis identified five different missense variants (two recurrent mutations were found respectively in three and four independent families). All the mutations were predicted to localize in the trypsin-like cysteine/serine peptidase domain of the protein. We suggest gain-of-function or dominant-negative mutations resulting in FAM111B enzymatic activity changes.ConclusionsHFP with tendon contractures, myopathy and pulmonary fibrosis, is a multisystemic disorder due to autosomal dominant FAM111B mutations. Future functional studies will help in understanding the specific pathological process of this fibrosing disorder.
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    Open Access
    The skin microbiome: impact of modern environments on skin ecology, barrier integrity, and systemic immune programming
    (2017) Prescott, Susan L; Larcombe, Danica-Lea; Logan, Alan C; West, Christina; Burks, Wesley; Caraballo, Luis; Schoeman, Johan; Etten, Eddie Van; Horwitz, Pierre; Kozyrskyj, Anita; Campbell, Dianne E
    Skin barrier structure and function is essential to human health. Hitherto unrecognized functions of epidermal keratinocytes show that the skin plays an important role in adapting whole-body physiology to changing environments, including the capacity to produce a wide variety of hormones, neurotransmitters and cytokine that can potentially influence whole-body states, and quite possibly, even emotions. Skin microbiota play an integral role in the maturation and homeostatic regulation of keratinocytes and host immune networks with systemic implications. As our primary interface with the external environment, the biodiversity of skin habitats is heavily influenced by the biodiversity of the ecosystems in which we reside. Thus, factors which alter the establishment and health of the skin microbiome have the potential to predispose to not only cutaneous disease, but also other inflammatory non-communicable diseases (NCDs). Indeed, disturbances of the stratum corneum have been noted in allergic diseases (eczema and food allergy), psoriasis, rosacea, acne vulgaris and with the skin aging process. The built environment, global biodiversity losses and declining nature relatedness are contributing to erosion of diversity at a micro-ecological level, including our own microbial habitats. This emphasises the importance of ecological perspectives in overcoming the factors that drive dysbiosis and the risk of inflammatory diseases across the life course.