Browsing by Subject "Sea water"

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    Open Access
    Environmental influences on the abundance and sexual composition of white sharks Carcharodon carcharias in Gansbaai, South Africa
    (Public Library of Science, 2013) Towner, Alison V; Underhill, Les G; Jewell, Oliver J D; Smale, Malcolm J
    The seasonal occurrence of white sharks visiting Gansbaai, South Africa was investigated from 2007 to 2011 using sightings from white shark cage diving boats. Generalized linear models were used to investigate the number of great white sharks sighted per trip in relation to sex, month, sea surface temperature and Multivariate El Niño/Southern Oscillation (ENSO) Indices (MEI). Water conditions are more variable in summer than winter due to wind-driven cold water upwelling and thermocline displacement, culminating in colder water temperatures, and shark sightings of both sexes were higher during the autumn and winter months (March-August). MEI, an index to quantify the strength of Southern Oscillation, differed in its effect on the recorded numbers of male and female white sharks, with highly significant interannual trends. This data suggests that water temperature and climatic phenomena influence the abundance of white sharks at this coastal site. In this study, more females were seen in Gansbaai overall in warmer water/positive MEI years. Conversely, the opposite trend was observed for males. In cool water years (2010 to 2011) sightings of male sharks were significantly higher than in previous years. The influence of environmental factors on the physiology of sharks in terms of their size and sex is discussed. The findings of this study could contribute to bather safety programmes because the incorporation of environmental parameters into predictive models may help identify times and localities of higher risk to bathers and help mitigate human-white shark interactions.
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    Open Access
    gbpA as a Novel qPCR Target for the Species-Specific Detection of Vibrio cholerae O1, O139, Non-O1/Non-O139 in Environmental, Stool, and Historical Continuous Plankton Recorder Samples
    (Public Library of Science, 2015) Vezzulli, Luigi; Stauder, Monica; Grande, Chiara; Pezzati, Elisabetta; Verheye, Hans M.; Owens, Nicholas J. P.; Pruzzo, Carla
    The Vibrio cholerae N-acetyl glucosamine-binding protein A (GbpA) is a chitin-binding protein involved in V . cholerae attachment to environmental chitin surfaces and human intestinal cells. We previously investigated the distribution and genetic variations of gbpA in a large collection of V . cholerae strains and found that the gene is consistently present and highly conserved in this species. Primers and probe were designed from the gbpA sequence of V . cholerae and a new Taq-based qPCR protocol was developed for diagnostic detection and quantification of the bacterium in environmental and stool samples. In addition, the positions of primers targeting the gbpA gene region were selected to obtain a short amplified fragment of 206 bp and the protocol was optimized for the analysis of formalin-fixed samples, such as historical Continuous Plankton Recorder (CPR) samples. Overall, the method is sensitive (50 gene copies), highly specific for V . cholerae and failed to amplify strains of the closely-related species Vibrio mimicus . The sensitivity of the assay applied to environmental and stool samples spiked with V . cholerae ATCC 39315 was comparable to that of pure cultures and was of 10 2 genomic units/l for drinking and seawater samples, 10 1 genomic units/g for sediment and 10 2 genomic units/g for bivalve and stool samples. The method also performs well when tested on artificially formalin-fixed and degraded genomic samples and was able to amplify V . cholerae DNA in historical CPR samples, the earliest of which date back to August 1966. The detection of V . cholerae in CPR samples collected in cholera endemic areas such as the Benguela Current Large Marine Ecosystem (BCLME) is of particular significance and represents a proof of concept for the possible use of the CPR technology and the developed qPCR assay in cholera studies.