Journal Articles

Permanent URI for this collection

https://open.uct.ac.za/handle/11427/29124

Browse

Now showing 1 - 12 of 12

Open Access
Accuracy of ARGOS locations of pinnipeds at-sea estimated using Fastloc GPS
(Public Library of Science, 2010) Costa, Daniel P; Robinson, Patrick W; Arnould, John P Y; Harrison, Autumn-Lynn; Simmons, Samantha E; Hassrick, Jason L; Hoskins, Andrew J; Kirkman, Stephen P; Oosthuizen, Herman; Villegas-Amtmann, Stella
BACKGROUND: ARGOS satellite telemetry is one of the most widely used methods to track the movements of free-ranging marine and terrestrial animals and is fundamental to studies of foraging ecology, migratory behavior and habitat-use. ARGOS location estimates do not include complete error estimations, and for many marine organisms, the most commonly acquired locations (Location Class 0, A, B, or Z) are provided with no declared error estimate. METHODOLOGY/PRINCIPAL FINDINGS: We compared the accuracy of ARGOS locations to those obtained using Fastloc GPS from the same electronic tags on five species of pinnipeds: 9 California sea lions ( Zalophus californianus ), 4 Galapagos sea lions ( Zalophus wollebaeki ), 6 Cape fur seals ( Arctocephalus pusillus pusillus ), 3 Australian fur seals ( A. p. doriferus ) and 5 northern elephant seals ( Mirounga angustirostris ). These species encompass a range of marine habitats (highly pelagic vs coastal), diving behaviors (mean dive durations 2-21 min) and range of latitudes (equator to temperate). A total of 7,318 ARGOS positions and 27,046 GPS positions were collected. Of these, 1,105 ARGOS positions were obtained within five minutes of a GPS position and were used for comparison. The 68 th percentile ARGOS location errors as measured in this study were LC-3 0.49 km, LC-2 1.01 km, LC-1 1.20 km, LC-0 4.18 km, LC-A 6.19 km, LC-B 10.28 km. Conclusions/Significance The ARGOS errors measured here are greater than those provided by ARGOS, but within the range of other studies. The error was non-normally distributed with each LC highly right-skewed. Locations of species that make short duration dives and spend extended periods on the surface (sea lions and fur seals) had less error than species like elephant seals that spend more time underwater and have shorter surface intervals. Supplemental data ( S1 ) are provided allowing the creation of density distributions that can be used in a variety of filtering algorithms to improve the quality of ARGOS tracking data.
Open Access
Effects of smart position only (SPOT) tag deployment on white sharks Carcharodon carcharias in South Africa
(Public Library of Science, 2011) Jewell, Oliver J D; Wcisel, Michelle A; Gennari, Enrico; Towner, Alison V; Bester, Marthán N; Johnson, Ryan L; Singh, Sarika
We present 15 individual cases of sub-adult white sharks that were SPOT tagged in South Africa from 2003-2004 and have been re-sighted as recently as 2011. Our observations suggest SPOT tags can cause permanent cosmetic and structural damage to white shark dorsal fins depending on the duration of tag attachment. SPOT tags that detached within 12-24 months did not cause long term damage to the dorsal fin other than pigmentation scarring. Within 12 months of deployment, tag fouling can occur. After 24 months of deployment permanent damage to the dorsal fin occurred. A shark survived this prolonged attachment and there seems little compromise on the animal's long term survival and resultant body growth. This is the first investigation detailing the long term effects of SPOT deployment on the dorsal fin of white sharks.
Open Access
Environmental influences on the abundance and sexual composition of white sharks Carcharodon carcharias in Gansbaai, South Africa
(Public Library of Science, 2013) Towner, Alison V; Underhill, Les G; Jewell, Oliver J D; Smale, Malcolm J
The seasonal occurrence of white sharks visiting Gansbaai, South Africa was investigated from 2007 to 2011 using sightings from white shark cage diving boats. Generalized linear models were used to investigate the number of great white sharks sighted per trip in relation to sex, month, sea surface temperature and Multivariate El Niño/Southern Oscillation (ENSO) Indices (MEI). Water conditions are more variable in summer than winter due to wind-driven cold water upwelling and thermocline displacement, culminating in colder water temperatures, and shark sightings of both sexes were higher during the autumn and winter months (March-August). MEI, an index to quantify the strength of Southern Oscillation, differed in its effect on the recorded numbers of male and female white sharks, with highly significant interannual trends. This data suggests that water temperature and climatic phenomena influence the abundance of white sharks at this coastal site. In this study, more females were seen in Gansbaai overall in warmer water/positive MEI years. Conversely, the opposite trend was observed for males. In cool water years (2010 to 2011) sightings of male sharks were significantly higher than in previous years. The influence of environmental factors on the physiology of sharks in terms of their size and sex is discussed. The findings of this study could contribute to bather safety programmes because the incorporation of environmental parameters into predictive models may help identify times and localities of higher risk to bathers and help mitigate human-white shark interactions.
Open Access
Evaluating the impact of handling and logger attachment on foraging parameters and physiology in southern rockhopper penguins
(Public Library of Science, 2012) Ludynia, Katrin; Dehnhard, Nina; Poisbleau, Maud; Demongin, Laurent; Masello, Juan F; Quillfeldt, Petra
Logger technology has revolutionised our knowledge of the behaviour and physiology of free-living animals but handling and logger attachments may have negative effects on the behaviour of the animals and their welfare. We studied southern rockhopper penguin ( Eudyptes chrysocome ) females during the guard stage in three consecutive breeding seasons (2008/09−2010/11) to evaluate the effects of handling and logger attachment on foraging trip duration, dive behaviour and physiological parameters. Smaller dive loggers (TDRs) were used in 2010/11 for comparison to larger GPS data loggers used in all three seasons and we included two categories of control birds: handled controls and PIT control birds that were previously marked with passive integrative transponders (PITs), but which had not been handled during this study. Increased foraging trip duration was only observed in GPS birds during 2010/11, the breeding season in which we also found GPS birds foraging further away from the colony and travelling longer distances. Compared to previous breeding seasons, 2010/11 may have been a period with less favourable environmental conditions, which would enhance the impact of logger attachments. A comparison between GPS and TDR birds showed a significant difference in dive depth frequencies with birds carrying larger GPS data loggers diving shallower. Mean and maximum dive depths were similar between GPS and TDR birds. We measured little impact of logger attachments on physiological parameters (corticosterone, protein, triglyceride levels and leucocyte counts). Overall, handling and short-term logger attachments (1-3 days) showed limited impact on the behaviour and physiology of the birds but care must be taken with the size of data loggers on diving seabirds. Increased drag may alter their diving behaviour substantially, thus constraining them in their ability to catch prey. Results obtained in this study indicate that data recorded may also not represent their normal dive behaviour.
Open Access
Good days, bad days: wind as a driver of foraging success in a flightless seabird, the southern Rockhopper Penguin
(Public Library of Science, 2013) Dehnhard, Nina; Ludynia, Katrin; Poisbleau, Maud; Demongin, Laurent; Quillfeldt, Petra
Due to their restricted foraging range, flightless seabirds are ideal models to study the short-term variability in foraging success in response to environmentally driven food availability. Wind can be a driver of upwelling and food abundance in marine ecosystems such as the Southern Ocean, where wind regime changes due to global warming may have important ecological consequences. Southern rockhopper penguins ( Eudyptes chrysocome ) have undergone a dramatic population decline in the past decades, potentially due to changing environmental conditions. We used a weighbridge system to record daily foraging mass gain (the difference in mean mass of adults leaving the colony in the morning and returning to the colony in the evening) of adult penguins during the chick rearing in two breeding seasons. We related the day-to-day variability in foraging mass gain to ocean wind conditions (wind direction and wind speed) and tested for a relationship between wind speed and sea surface temperature anomaly (SSTA). Foraging mass gain was highly variable among days, but did not differ between breeding seasons, chick rearing stages (guard and crèche) and sexes. It was strongly correlated between males and females, indicating synchronous changes among days. There was a significant interaction of wind direction and wind speed on daily foraging mass gain. Foraging mass gain was highest under moderate to strong winds from westerly directions and under weak winds from easterly directions, while decreasing under stronger easterly winds and storm conditions. Ocean wind speed showed a negative correlation with daily SSTA, suggesting that winds particularly from westerly directions might enhance upwelling and consequently the prey availability in the penguins' foraging areas. Our data emphasize the importance of small-scale, wind-induced patterns in prey availability on foraging success, a widely neglected aspect in seabird foraging studies, which might become more important with increasing changes in climatic variability.
Open Access
Hand-rearing, release and survival of african penguin chicks abandoned before independence by moulting parents
(Public Library of Science, 2014) Sherley, Richard B; Waller, Lauren J; Strauss, Venessa; Geldenhuys, Deon; Underhill, Les G; Parsons, Nola J
The African penguin Spheniscus demersus has an ‘Endangered’ conservation status and a decreasing population. Following abandonment, 841 African penguin chicks in 2006 and 481 in 2007 were admitted to SANCCOB (Southern African Foundation for the Conservation of Coastal Birds) for hand-rearing from colonies in the Western Cape, South Africa, after large numbers of breeding adults commenced moult with chicks still in the nest. Of those admitted, 91% and 73% respectively were released into the wild. There were veterinary concerns about avian malaria, airsacculitis and pneumonia, feather-loss and pododermatitis (bumblefoot). Post-release juvenile (0.32, s.e. = 0.08) and adult (0.76, s.e. = 0.10) survival rates were similar to African penguin chicks reared after oil spills and to recent survival rates recorded for naturally-reared birds. By December 2012, 12 birds had bred, six at their colony of origin, and the apparent recruitment rate was 0.11 (s.e. = 0.03). Hand-rearing of abandoned penguin chicks is recommended as a conservation tool to limit mortality and to bolster the population at specific colonies. The feasibility of conservation translocations for the creation of new colonies for this species using hand-reared chicks warrants investigation. Any such programme would be predicated on adequate disease surveillance programmes established to minimise the risk of disease introduction to wild birds.
Open Access
Overlap in utilization of juvenile Cape Horse Mackerel by Cape Fur Seals and the purse-seine fishery in Namibia
(Southern African Wildlife Management Association, 2007) Mecenero, Silvia; Underhill, Les G; Krakstad, Jens-Otto; Kirkman, Stephen P; Roux, Jean-Paul
The Cape horse mackerel Trachurus trachurus capensisis one of Namibia's most valuable fish stocks, and an important component to the diet of Cape fur seals, Arctocephalus pusillus pusillus, off northern Namibia. The level of overlap in the utilization of this resource between seals and the purse-seine fishery was investigated using two overlap indices. For high overlap measures, seals and the purse-seine fishery utilized age-2 horse mackerel. For low overlap measures, seals mainly consumed age-0 fish whereas the fishery caught age-2 fish. Both indices were adjusted by the proportion of horse mackerel in the seal diet, with the assumption that the proportion consumed by the seals reflects the abundance of horse mackerel in the coastal waters of Cape Cross, Namibia. Both unadjusted and adjusted overlap indices showed that overlap between seals and the fishery in their utilization of juvenile horse mackerel was high only at times when horse mackerel abundance was high, and low when abundance was small. Confidence intervals and significance testing were included. Overall, there was little overlap between seals and the purse-seine fishery. This study provides important information that should be taken into account in the management of the horse mackerel resource.
Open Access
Phenological changes in the Southern Hemisphere
(Public Library of Science, 2013) Chambers, Lynda E; Altwegg, Res; Barbraud, Christophe; Barnard, Phoebe; Beaumont, Linda J; Crawford, Robert J M; Durant, Joel M; Hughes, Lesley; Keatley, Marie R; Low, Matt
Current evidence of phenological responses to recent climate change is substantially biased towards northern hemisphere temperate regions. Given regional differences in climate change, shifts in phenology will not be uniform across the globe, and conclusions drawn from temperate systems in the northern hemisphere might not be applicable to other regions on the planet. We conduct the largest meta-analysis to date of phenological drivers and trends among southern hemisphere species, assessing 1208 long-term datasets from 89 studies on 347 species. Data were mostly from Australasia (Australia and New Zealand), South America and the Antarctic/subantarctic, and focused primarily on plants and birds. This meta-analysis shows an advance in the timing of spring events (with a strong Australian data bias), although substantial differences in trends were apparent among taxonomic groups and regions. When only statistically significant trends were considered, 82% of terrestrial datasets and 42% of marine datasets demonstrated an advance in phenology. Temperature was most frequently identified as the primary driver of phenological changes; however, in many studies it was the only climate variable considered. When precipitation was examined, it often played a key role but, in contrast with temperature, the direction of phenological shifts in response to precipitation variation was difficult to predict a priori . We discuss how phenological information can inform the adaptive capacity of species, their resilience, and constraints on autonomous adaptation. We also highlight serious weaknesses in past and current data collection and analyses at large regional scales (with very few studies in the tropics or from Africa) and dramatic taxonomic biases. If accurate predictions regarding the general effects of climate change on the biology of organisms are to be made, data collection policies focussing on targeting data-deficient regions and taxa need to be financially and logistically supported.
Open Access
Ranging Behaviour of Verreaux's Eagles during the Pre-Breeding Period Determined through the Use of High Temporal Resolution Tracking
(Public Library of Science, 2016) Murgatroyd, Megan; Underhill, Les G; Bouten, Willem; Amar, Arjun
Information on movement ecology is key in understanding the drivers and limitations of life history traits and has a potential role in indicating environmental change. Currently we have a limited understanding of the parameters of movement of territory-bound raptors, which are sensitive to environmental change. In this study we used GPS tracking technology to obtain spatially (within 3 m) and temporally ( c . 3 mins) high-resolution movement data on a small sample of Verreaux's eagle Aquila verreauxii during the pre-laying period ( n = 4) with one additional example during the chick rearing period. We present GPS-derived home range estimates for this species and we examine temporal (timing, duration, frequency and speed) and spatial (total path length and maximum distance from nest) patterns of trips away from the nest. For eagles tagged in the agriculturally developed Sandveld region ( n = 3), which is made up of a mosaic of land use types, we also undertook a habitat selection analysis. Home ranges were small and largely mutually exclusive. Trip activity was centred around midday, which is likely to be related to lift availability. Our habitat selection analysis found that eagles selected for near-natural and degraded habitat over natural or completely modified areas, suggesting that these eagles may have benefitted from some of the agricultural development in this region. Although our sample sizes are small, the resolution of our tracking data was essential in deriving this data over a relatively short time period and paves the way for future research.
Open Access
Revisiting the effect of capture heterogeneity on survival estimates in capture-mark-recapture studies: does it matter?
(Public Library of Science, 2013) Abadi, Fitsum; Botha, Andre; Altwegg, Res
Recently developed capture-mark-recapture methods allow us to account for capture heterogeneity among individuals in the form of discrete mixtures and continuous individual random effects. In this article, we used simulations and two case studies to evaluate the effectiveness of continuously distributed individual random effects at removing potential bias due to capture heterogeneity, and to evaluate in what situation the added complexity of these models is justified. Simulations and case studies showed that ignoring individual capture heterogeneity generally led to a small negative bias in survival estimates and that individual random effects effectively removed this bias. As expected, accounting for capture heterogeneity also led to slightly less precise survival estimates. Our case studies also showed that accounting for capture heterogeneity increased in importance towards the end of study. Though ignoring capture heterogeneity led to a small bias in survival estimates, such bias may greatly impact management decisions. We advocate reducing potential heterogeneity at the sampling design stage. Where this is insufficient, we recommend modelling individual capture heterogeneity in situations such as when a large proportion of the individuals has a low detection probability (e.g. in the presence of floaters) and situations where the most recent survival estimates are of great interest (e.g. in applied conservation).
Open Access
Secretarybird Sagittarius serpentarius Population Trends and Ecology: Insights from South African Citizen Science Data
(PLoS (Public Library of Science), 2014-05-09) Hofmeyr, Sally D; Symes, Craig T; Underhill, Leslie G
Data from two long-term citizen science projects were used to examine the status and ecology of a Red List species, the Secretarybird Sagittarius serpentarius (Vulnerable), in South Africa. The first phase of the Southern African Bird Atlas Project operated from 1987 until 1992, and the second phase began in 2007. The Coordinated Avifaunal Roadcounts (CAR) project began in 1993 and by 1998 had expanded to cover much of the south-eastern half of the country. Data submitted up until April 2013 were used. A new method of comparing reporting rates between atlas projects was developed. Changing reporting rates are likely to reflect changes in abundance; in this instance the data suggest that the Secretarybird population decreased across much of South Africa between the two atlas projects, with a widespread important decrease in the Kruger National Park. Habitat data from the CAR project were analysed to gain insight into the ecology of the species. Secretarybirds tended to avoid transformed habitats across much of the area covered by the CAR project. In the winter rainfall region of the Western Cape, which is characterised by heavily transformed fynbos vegetation, at least 50% of Secretarybirds recorded were in transformed environments. This implies that in the Fynbos biome, at least, Secretarybirds have adapted to transformed environments to some degree. However, in the rest of the country it is likely that habitat loss, largely through widespread bush encroachment but also through agriculture, afforestation, and urbanisation, is a major threat to the species. The methods developed here represent a new approach to analysing data from long-term citizen science projects, which can provide important insights into a species’ conservation status and ecology.
Open Access
A space oddity: geographic and specific modulation of migration in Eudyptes penguins
(Public Library of Science, 2013) Thiebot, Jean-Baptiste; Cherel, Yves; Crawford, Robert J M; Makhado, Azwianewi B; Trathan, Philip N; Pinaud, David; Bost, Charles-André
Post-breeding migration in land-based marine animals is thought to offset seasonal deterioration in foraging or other important environmental conditions at the breeding site. However the inter-breeding distribution of such animals may reflect not only their optimal habitat, but more subtle influences on an individual's migration path, including such factors as the intrinsic influence of each locality's paleoenvironment, thereby influencing animals' wintering distribution. In this study we investigated the influence of the regional marine environment on the migration patterns of a poorly known, but important seabird group. We studied the inter-breeding migration patterns in three species of Eudyptes penguins ( E. chrysolophus , E. filholi and E. moseleyi ), the main marine prey consumers amongst the World's seabirds. Using ultra-miniaturized logging devices (light-based geolocators) and satellite tags, we tracked 87 migrating individuals originating from 4 sites in the southern Indian Ocean (Marion, Crozet, Kerguelen and Amsterdam Islands) and modelled their wintering habitat using the MADIFA niche modelling technique. For each site, sympatric species followed a similar compass bearing during migration with consistent species-specific latitudinal shifts. Within each species, individuals breeding on different islands showed contrasting migration patterns but similar winter habitat preferences driven by sea-surface temperatures. Our results show that inter-breeding migration patterns in sibling penguin species depend primarily on the site of origin and secondly on the species. Such site-specific migration bearings, together with similar wintering habitat used by parapatrics, support the hypothesis that migration behaviour is affected by the intrinsic characteristics of each site. The paleo-oceanographic conditions (primarily, sea-surface temperatures) when the populations first colonized each of these sites may have been an important determinant of subsequent migration patterns. Based on previous chronological schemes of taxonomic radiation and geographical expansion of the genus Eudyptes , we propose a simple scenario to depict the chronological onset of contrasting migration patterns within this penguin group.

Browse

Browsing Journal Articles by Department "Animal Demography Unit (ADU)"

Results Per Page

Sort Options