Browsing by Author "Verboom, George"

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    Reassessment of species limits and diversification process in the Cape grass genus Ehrharta Thunb
    (2020) Wootton, Lara; Verboom, George
    The Greater Cape Floristic Region (GCFR) of South Africa has one of the most biodiverse floras in the world. Although ecological speciation is thought to be a primary mechanism behind diversification in the GCFR, it has recently been hypothesised that non-ecological speciation may have an influential role in driving diversification in the montane “sky islands” of the GCFR, potentially resulting in cryptic species. This work seeks to test the relative importance of ecological versus non-ecological processes in powering speciation at different elevations in the GCFR, and to assess the existence of multiple, range-restricted cryptic species at high elevations. The Cape grass genus Ehrharta is an ideal system in which to investigate these processes, as it contains low-, mid-, and high-elevation lineages, with a previously documented adaptive radiation in the succulent karoo. Population-level phylogenetic analyses using targeted enrichment sequencing data show that E. rupestris and E. setacea, as currently defined, are polyphyletic, and reveal multiple distinct monophyletic lineages within the Ramosa, Rehmannii and Setacea clades of genus Ehrharta. Analysis of genotyping-by-sequencing and morphological data, together with evidence of sympatry, confirm these lineages to be distinct entities, resulting in 13 to 16 putative new species, of which several can be considered cryptic. The crown node of Ehrharta is found to have originated 28 Ma, which substantially antedates previous age estimates. Comparisons of morphological evolutionary rates, as well as rates of nonsynonymous to synonymous sequence evolution (��), provide little evidence to support the hypothesis that non-ecological processes have been more important at high elevations. Both the low- and high-elevation clades show evidence of divergent ecological selection, with the Lowlands clade exhibiting high functional trait variance, and the high-elevation Setacea clade showing subtle ecological differentiation and accelerated rates of morphological evolution and �� relative to the rest of Cape Ehrharta. It is instead suggested that diversification in the Cape Ehrharta is triggered by a combination of intrinsic and extrinsic factors unique to each clade, thus corroborating a growing body of research arguing that it is simplistic to generalise radiations as ‘adaptive’ or ‘non-adaptive’. Instead, mountain radiations require an integrated approach to untangle the subtle interaction of geographic, ecological and biological factors that drive diversification.
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    The importance of hydrologic refugia for the diversity of the Cape Flora
    (2025) Nhlapo, Kagiso; Slingsby, Jasper; Verboom, George
    Refugia are sites with more stable climate and hydrology than the surrounding area. There is growing recognition of the need to conserve refugia due to their role in harboring rare and endemic plants that might otherwise be prone to extinction due to global change. These sites are considered crucial for preserving species richness in the Cape Floristic Region (CFR) of South Africa, an area renowned for its exceptional plant species diversity and endemism, which is increasingly threatened by the impacts of global change. Despite the importance of refugia in the CFR, very little is known about their distribution. To fill this knowledge gap, I identify the distribution and character of refugia (mesic or xeric) by mapping total species richness (TSR), the distribution of widespread species (WS), narrow-range endemics (NREs), and wetland dependent narrow-range endemics (WD-NREs) and explore the environmental correlates of these distributions. I make use of Quarter degree square grid cells as a measuring unit, which are larger (~20 km across), than the scale at which microrefugia typically occur, however, the broad environmental heterogeneity within these units provides a meaningful basis for identifying potential refugial areas. From this study I find that the spatial distributions of TSR, WS, NREs and WD-NREs exhibited topographic and longitudinal gradients, with more species found in the southwestern CFR and in the mountains. Differences were observed in their correlates, where productivity, environmental stability explained TSR and WS, whereas environmental heterogeneity and environmental stability explained NREs and WD-NREs. Hydrological stability (such as groundwater-fed wetlands and seeps) and climatic stability (climatic stability index) have been documented to be indicators of refugia. Where hydrologic refugia provide broad-scale stable conditions for endemics and were found to play a significant role in maintaining persistence species in the CFR. These refugial sites face significant threats from groundwater abstraction, invasive species, and global change, highlighting the need for detailed fine-scale mapping and conservation of microrefugia within the broader refugial areas. Protecting these sites is essential for conserving biodiversity and ecosystem function in the CFR.